josh@whiteley — -zsh — 80×24
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Josh Whiteley — data scientist · ml engineer · computational biologist
BME PhD @ Tufts · optimizing TB treatment with ML · open to work
 
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Try:

$ cat about.md

I'm a Biomedical Engineering PhD candidate at Tufts University (Aldridge Lab). I build machine-learning models that optimize tuberculosis treatment — turning messy experimental data into deployable, interpretable predictions.

B.S. Bioengineering, UIUC. Previously: cancer FTIR research.

$ ls research/

tb_regimen_optimization/

Modeling multi-drug interactions to predict optimal combination therapies.

ml_mechanism_of_action/

Deep learning to infer drug mechanism from high-dimensional assays.

compbio_pipelines/

Reproducible, containerized analysis pipelines on SLURM clusters.

$ cat publications.bib

$ cat skills.json

{
"languages": ["Python", "R", "SQL", "MATLAB", "Bash"],
"ml": ["scikit-learn", "PyTorch", "XGBoost", "SHAP"],
"data": ["pandas", "polars", "NumPy"],
"infra": ["Docker", "Linux", "SLURM", "Flask", "Git"],
}

$ ./contact --connect